Published September 30, 2022 | Version v1
Journal article Restricted

DNA barcode data confirm the placement of subterranean Noemacheilus (Troglocobitis) starostini Parin 1983 in the genus Paracobitis (Teleostei, Nemacheilidae)

  • 1. Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, 10115 Berlin, Germany.
  • 2. Museum Koenig Bonn, Leibniz Institute for the Analysis of Biodiversity Change, Adenauerallee 160, 53113 Bonn, Germany.
  • 3. Institute of Zoology, Zoological Society of London, Regents Park, London NW1 4RY, United Kingdom. https://orcid.org/0000-0002-2003-0325
  • 4. Bristol Zoological Society, Clifton, Bristol, BS8 3HA, United Kingdom. https://orcid.org/0000-0002-4428-8451

Description

Freyhof, Jörg, Geiger, Matthias F., Ball, Sarah, Zimmerman, Brian (2022): DNA barcode data confirm the placement of subterranean Noemacheilus (Troglocobitis) starostini Parin 1983 in the genus Paracobitis (Teleostei, Nemacheilidae). Zootaxa 5190 (4): 565-574, DOI: 10.11646/zootaxa.5190.4.6

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Identifiers

URL
https://www.checklistbank.org/dataset/308220
LSID
urn:lsid:zoobank.org:pub:87A1B2FA-BC74-447A-BB8F-899A6F86678E
LSID
urn:lsid:plazi.org:pub:FF8BBB24303EFFCAFFD1FFA9FFA8FFE2
URL
http://publication.plazi.org/id/FF8BBB24303EFFCAFFD1FFA9FFA8FFE2

References

  • Banarescu, P.G. & Nalbant., T.T. (1966) The 3rd Danish Expedition to Central Asia. Zoological results 34. Cobitidae (Pisces) from Afghanistan and Iran. Videnskabelige Meddelelser fra Dansk Naturhistorisk Forening i KObenhavn, 129, 149-186.
  • Behrmann-Godel, J., Nolte, A.W., Kreiselmaier, J., Berka, R. & Freyhof, J. (2017) The first European cave fish. Current Biology, 27, R243-R258.
  • Biomatters (2013) Geneious Pro. Available from: http://www.geneious.com (accessed 15 August 2018)
  • Chen, W., Ma, X., Shen, Y., Mao, Y. & He, S. (2015) The fish diversity in the upper reaches of the Salween River, Nujiang River, revealed by DNA barcoding. Scientific Reports, 5, 17437. https://doi.org/10.1038/srep17437
  • Edgar, R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic acids research, 32, 1792-1797. https://doi.org/10.1093/nar/gkh340
  • Esmaeili, H.R., Sayyadzadeh, G., Ozulud, M., Geiger, M. & Freyhof, J. (2014) Three new species of Turcinoemacheilus from Iran and Turkey (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 24, 257-273.
  • Freyhof, J., Erk'akan, F., Ozeren, C. & Perdices,A.J. (2011) An overview of the western Palaearctic loach genus Oxynoemacheilus (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 22, 301-312.
  • Freyhof, J., Abdullah, Y.S., Ararat, K., Ibrahim, H. & Geiger, M.F. (2016) Eidinemacheilus proudlovei, a new subterranean loach from Iraqi Kurdistan (Teleostei; Nemacheilidae). Zootaxa, 4173 (3), 225-236. https://doi.org/10.11646/zootaxa.4173.3.2
  • Freyhof, J., Sayyadzadeh, G., Esmaeili, H.R. & Geiger, M. (2015) Review of the genus Paraschistura from Iran with description of six new species (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 26, 1-48.
  • Freyhof, J., Esmaeili, H.R., Sayyadzadeh, G. & Geiger, M. (2014) Review of the crested loaches of the genus Paracobitis from Iran and Iraq with the description of four new species (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 25 (1), 11-38.
  • Freyhof, J., Geiger, M.F., Golzarianpour, K. & Patimar, R. (2016) Sasanidus, a new generic name for Noemacheilus kermanshahensis Banarescu & Nalbant, with discussion of Ilamnemacheilus and Schistura (Teleostei; Nemacheilidae). Zootaxa, 4107 (1), 65-80. https://doi.org/10.11646/zootaxa.4107.1.3
  • Geiger, M.F., Herder, F., Monaghan, M.T., Almada, V., Barbieri, R., Bariche, M., Berrebi, P., Bohlen, J., Casal-Lopez, M., Delmastro, G.B., Denys, G.P.J., Dettai, A., Doadrio, I., Kalogianni, E., Karst, H., Kottelat, M., Kovacic, M., Laporte, M., Lorenzoni, M., Marcic, Z., Ozulud, M., Perdices, A., Perea, S., Persat, H., Porcelotti, S., Puzzi, C., Robalo, J., Sanda, R., Schneider, M., Slechtova, V., Stoumboudi, M., Walter, S. & Freyhof, J. (2014), Spatial heterogeneity in the Mediterranean Biodiversity Hotspot affects barcoding accuracy of its freshwater fishes. Molecular Ecology Resources, 14: 1210-1221. https://doi.org/10.1111/1755-0998.12257
  • Hamidan, N.A., Geiger, M. & Freyhof, J. (2014) Garra jordanica, a new species from the Dead Sea basin with remarks on the relationship of G. ghorensis, G. tibanica and G. rufa (Teleostei: Cyprinidae). Ichthyological Exploration of Freshwaters, 25, 223-236.
  • Hashemzadeh Segherloo, I.H., Ghaedrahmati, N. & Freyhof, J. (2016) Eidinemacheilus, a new generic name for Noemacheilus smithi Greenwood (Teleostei; Nemacheilidae). Zootaxa, 4147 (4), 466-476.
  • Ivanova, N.V., Zemlak, T.S., Hanner, R.H. & Hebert, P.D.N. (2007) Universal primer cocktails for fish DNA barcoding. Molecular Ecology Notes, 7, 544-548. https://doi.org/10.1111/j.1471-8286.2007.01748.x
  • Kaya, C., Turan, D., Kalayci, G, Baycelebi, E. & Freyhof, J. (2020) The westernmost known population of Paracobitis (Teleostei, Nemacheilidae), with the description of a new species from the Euphrates River in southern Anatolia. Zootaxa, 4838 (4), 525-534. https://doi.org/10.11646/zootaxa.4838.4.6
  • Keene, A.C., Yoshizawa, M. & McGaugh, S. (2015) Biology and evolution of the Mexican cave fish. Academic Press, Elsevier, Waltham, Massachusetts, 412 pp.
  • Kottelat, M. (1987) Nomenclatural status of the fish names created by J. C.van Hasselt (1823) and of some cobitoid genera. Ichthyological Research, 33 (4), 368-375. https://doi.org/10.1007/BF02904097
  • Kottelat, M. (1990) Indochinese nemacheilines. A revision of nemacheiline loaches (Pisces: Cypriniformes) of Thailand, Burma, Laos, Cambodia and southern Viet Nam. Verlag Dr. Friedrich Pfeil, Munchen, 262 pp.
  • Kottelat, M. (2012) Conspectus cobitidum: an inventory of the loaches of the world (Teleostei: Cypriniformes: Cobitoidei). The Raffles Bulletin of Zoology, Supplement, 26, 1-199.
  • Kruckenhauser, L., Haring, E., Seemann, R. & Sattmann, H. (2011) Genetic differentiation between cave and surface dwelling populations of Garra barreimiae (Cyprinidae) in Oman. BMC Evolutionary Biology, 11, 172-186. https://doi.org/10.1186/1471-2148-11-172
  • Kumar, S., Stecher, G., Li, M., Kynyaz, C. & Tamura, K. (2018) MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549. https://doi.org/10.1093/molbev/msy096
  • Mao, T.R., Liu, Y.-W., Meegaskumbura, M., Yang, J., Ellepola, G., Senevirathne, G., Fu, C.-H., Gross, J.B. & Pie, M.R. (2021) Evolution in Sinocyclocheilus cavefish is marked by rate shifts, reversals, and origin of novel traits. BMC Ecology and Evolution, 21, 45. https://doi.org/10.1186/s12862-021-01776-y
  • Masters, B.C., Fan, V. & Ross, H.A. (2011) Species delimitation -a geneious plugin for the exploration of species boundaries. Molecular Ecology Resources, 11, 154-157. https://doi.org/10.1111/j.1755-0998.2010.02896.x
  • Meier R, Shiyang, K., Vaidya, G. & Ng, P.K.L. (2006) DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success. Systematic Biology, 55, 715-728. https://doi.org/10.1080/10635150600969864
  • Mousavi-Sabet, H., Vatandoust, S., Fatemi, Y. & Eagderi, S. (2016) Tashan Cave a new cave fish locality for Iran; and Garra tashanensis, a new blind species from the Tigris River drainage (Teleostei: Cyprinidae). FishTaxa, 1, 133-148.
  • Mousavi-Sabet, H., Vatandoust, S., Geiger, M.F. & Freyhof, J. (2019) Paracobitis abrishamchiani, a new crested loach from the southern Caspian Sea basin (Teleostei: Nemacheilidae). Zootaxa, 4545 (3), 375-388. https://doi.org/10.11646/zootaxa.4545.3.3
  • Nalbant, T.T. & Linares, O. (1987) A study of a subterranean population of Trichomycterus guianense (Eigenmann, 1909) from Venezuela (Pisces, Siluriformes, Trichomycteridae). In: Decu, V., Orghidan, T., Dancau, D. & Bordon, C. (Eds.), Fauna Hipogea y Semiedafica de Venezuela y de Otros Paises de America del Sur. Editura Academiei Republicii Socialiste Romania, Bucaresti, pp. 211-217.
  • Nguyen, D.T., Wu, H, Cao, L. & Zhang, E. (2021) Homatula dotui, a new cave loach from Central Vietnam (Teleostei: Nemacheilidae). Ichthyological Exploration of Freshwaters, 31 (1), 21-31.
  • Parin, N.V. (1983) Noemacheilus (Troglocobitis) starostini sp. n. (Osteichthyes, Gobitidae), un nouveau poisson aveugle des eaux souterraines de Kugitang-Tau (Turkmenie). Zoologicheskii Zhurnal, 62 (1), 83-89. [in Russian]
  • Prokofiev, A.M. (2009) Problems of the Classification and Phylogeny of Nemacheiline Loaches of the Group Lacking the Preethmoid I (Cypriniformes: Balitoridae: Nemacheilinae) Journal of Ichthyology, 49 (10), 874-898.
  • Proudlove, G.S. (2006) Subterranean fishes of the World. An account of the subterranean (hypogean) fishes described up to 2003 with a bibliography 1541-2004. International Society for Subterranean Biology, Moulis. [unknkown pagination]
  • Romero,A. & Paulson K.M. (2001) It's a wonderful hypogean life: a guide to the troglomorphic fishes of the world. Environmental Biology of Fishes, 62, 13-41.
  • Saitou, N. & Nei, M. (1987) The Neighbor-Joining Method -a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
  • Sayyadzadeha, G., Esmaeili, H.R. & Eagderi, S. (2019) Taxonomic status of the loaches Paracobitis vignai and P. rhadinaea (Teleostei: Nemacheilidae) in Iran. Zoology in the Middle East, 65 (3), 221-229. https://doi.org/10.1080/09397140.2019.1586143
  • Sheraliev, B. & Kayumova, Y. (2022) Issues of taxonomic status and conservation of loach species (Teleostei: Cobitoidei) in inland waters of Uzbekistan. Uzbek Biological Journal, 2, 35-40. [in Russian]
  • Sheraliev, B. & Peng, Z. (2021) Molecular diversity of Uzbekistan's fishes assessed with DNA barcoding. Scientific Reports, 11, 16894. https://doi.org/10.1038/s41598-021-96487-1
  • Swofford, D.L. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts. [program]
  • Tadmor-Levi, R., Borovski, T., Marcos-Hadad, E., Shapiro, J., Hulata, G., Golani, D. & David, L. (2022) Establishing and using a genetic database for resolving identification of fish species in the Sea of Galilee, Israel. PLoS ONE, 17 (5), e0267021. https://doi.org/10.1371/journal.pone.0267021
  • Welch, G. & Stoev, P. (2019) A report of RSPB-supported scientific research at Koytendag State Nature Reserve, East Turkmenistan. Pensoft Publishers, Sofia, 88 pp.
  • Yodurtcuodlu, B., Kaya, C., Geiger, M.F. & Freyhof, J. (2020) Revision of the genus Seminemacheilus, with the description of three new species (Teleostei: Nemacheilidae). Zootaxa, 4802 (3), 477-501. https://doi.org/10.11646/zootaxa.4802.3.5
  • Zimmerman, B., Jones, R. & Ball, S. (2019) Fish. In: A report of RSPB-supported scientific research at Koytendag State Nature Reserve, East Turkmenistan. Pensoft Publishers, Sofia, pp. 42-58.